Martin Fitzpatrick – Python tutorials, projects and books

Programming tutorials, articles & notes by Martin Fitzpatrick.

tools software

mplstyler

A simple API to keep line and marker styles consistent throughout plots

demos science

Analyzing public GEO datasets with Pathomx

This short demo shows analysis of a publically available GEO dataset using Pathomx, with a workflow build using the new …

demos science

Pathomx: Example Analysis

Short demo of an experimental analysis of metabolomic (NMR) data using Pathomx. Metabolomic test dataset produced from THP-1 cells grown …

tools python

Pathomx

Speed up your analysis with interactive data workflows built on Python.

tools python

Icoshift

A Python implementation of the icoshift spectral alignment algorithm.

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Writing on other sites

Python GUIs Youtube Pathomx does MATLAB, R, Python scripting 2014.02.19

Python GUIs Youtube Pathomx v2.0.0: Analysis using the new visual editor 2014.01.13

Python GUIs Youtube Pathomx: Analysis of example GEO dataset 2014.01.09

Python GUIs Youtube Pathomx (née MetaPath) Example Metabolomic Analysis 2013.11.11